Type: Package Package: sdmTMB Title: Spatial and Spatiotemporal SPDE-Based GLMMs with 'TMB' Version: 1.0.0.9017 Authors@R: c( person(c("Sean", "C."), "Anderson", , "sean@seananderson.ca", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-9563-1937")), person(c("Eric", "J."), "Ward", role = "aut", comment = c(ORCID = "0000-0002-4359-0296")), person(c("Philina", "A."), "English", role = "aut", comment = c(ORCID = "0000-0003-2992-6782")), person(c("Lewis", "A.", "K."), "Barnett", role = "aut", comment = c(ORCID = "0000-0002-9381-8375")), person(c("James", "T."), "Thorson", role = c("aut", "cph"), comment = c(ORCID = "0000-0001-7415-1010", "VAST author")), person("Joe", "Watson", role = "ctb", comment = "Censored Poisson"), person("Julia", "Indivero", role = "ctb", comment = c(ORCID = "0000-0001-5310-9542", "Vignette writing")), person(c("Jillian", "C."), "Dunic", role = "ctb", comment = c(ORCID = "0000-0002-0729-3083")), person("Joseph", "Barss", role = "ctb"), person(c("Cole", "C."), "Monnahan", role = c("ctb", "cph"), comment = c(ORCID = "0000-0003-0871-6700", "VAST contributor")), person("Mollie", "Brooks", role = c("ctb", "cph"), comment = c(ORCID = "0000-0001-6963-8326", "glmmTMB author")), person("Ben", "Bolker", role = c("ctb", "cph"), comment = c(ORCID = "0000-0002-2127-0443", "glmmTMB author")), person("Kasper", "Kristensen", role = c("ctb", "cph"), comment = "TMB/glmmTMB author"), person("Martin", "Maechler", role = c("ctb", "cph"), comment = c(ORCID = "0000-0002-8685-9910", "glmmTMB author")), person("Arni", "Magnusson", role = c("ctb", "cph"), comment = c(ORCID = "0000-0003-2769-6741", "glmmTMB author")), person(c("Hans", "J."), "Skaug", role = c("ctb", "cph"), comment = "glmmTMB author, SPDE barrier"), person("Anders", "Nielsen", role = c("ctb", "cph"), comment = c(ORCID = "0000-0001-9683-9262", "glmmTMB author")), person("Casper", "Berg", role = c("ctb", "cph"), comment = c(ORCID = "0000-0002-3812-5269", "glmmTMB author")), person("Koen", "van Bentham", role = c("ctb", "cph"), comment = "glmmTMB author"), person(c("Olav", "Nikolai"), "Breivik", role = c("ctb", "cph"), comment = "SPDE barrier"), person("Simon", "Wood", role = c("ctb", "cph"), comment = "mgcv: smoother prediction"), person("Paul-Christian", "Bürkner", role = c("ctb", "cph"), comment = "brms: smoother matrix parsing"), person(paste("His Majesty the King in Right of Canada, as represented by", "the Minister of the Department of Fisheries and Oceans"), role = "cph") ) Description: Implements spatial and spatiotemporal GLMMs (Generalized Linear Mixed Effect Models) using 'TMB', 'fmesher', and the SPDE (Stochastic Partial Differential Equation) Gaussian Markov random field approximation to Gaussian random fields. One common application is for spatially explicit species distribution models (SDMs). See Anderson et al. (2025) . License: GPL-3 Copyright: inst/COPYRIGHTS URL: https://sdmTMB.github.io/sdmTMB/, https://github.com/sdmTMB/sdmTMB BugReports: https://github.com/sdmTMB/sdmTMB/issues Depends: R (>= 4.1.0) Imports: assertthat, abind, cli, fmesher, fishMod, generics, graphics, igraph, lifecycle, Matrix, methods, mgcv, mvtnorm, nlme, reformulas (>= 0.4.4), rlang, stats, TMB (>= 1.8.0) Suggests: DHARMa, dplyr, effects (>= 4.0-1), estimability, emmeans (>= 1.4), future, future.apply, ggeffects, ggforce, glmmTMB, ggplot2, knitr, lme4, rmarkdown, sf, spatstat.data, splancs, testthat, tibble, visreg, waywiser LinkingTo: RcppEigen, TMB VignetteBuilder: knitr ByteCompile: true Config/testthat/edition: 3 Config/testthat/parallel: true Encoding: UTF-8 LazyData: true Roxygen: list(markdown = TRUE) SystemRequirements: GNU make Config/roxygen2/version: 8.0.0 Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev libglpk-dev make libxml2-dev libssl-dev libproj-dev libsqlite3-dev libudunits2-dev Repository: https://sdmtmb.r-universe.dev Date/Publication: 2026-07-02 23:46:34 UTC RemoteUrl: https://github.com/sdmtmb/sdmtmb RemoteRef: HEAD RemoteSha: 394c78b1c2801756c18c2bc315b1fde41c25d3e1 NeedsCompilation: yes Packaged: 2026-07-03 00:06:37 UTC; root Author: Sean C. Anderson [aut, cre] (ORCID: ), Eric J. Ward [aut] (ORCID: ), Philina A. English [aut] (ORCID: ), Lewis A. K. Barnett [aut] (ORCID: ), James T. Thorson [aut, cph] (ORCID: , VAST author), Joe Watson [ctb] (Censored Poisson), Julia Indivero [ctb] (ORCID: , Vignette writing), Jillian C. Dunic [ctb] (ORCID: ), Joseph Barss [ctb], Cole C. Monnahan [ctb, cph] (ORCID: , VAST contributor), Mollie Brooks [ctb, cph] (ORCID: , glmmTMB author), Ben Bolker [ctb, cph] (ORCID: , glmmTMB author), Kasper Kristensen [ctb, cph] (TMB/glmmTMB author), Martin Maechler [ctb, cph] (ORCID: , glmmTMB author), Arni Magnusson [ctb, cph] (ORCID: , glmmTMB author), Hans J. Skaug [ctb, cph] (glmmTMB author, SPDE barrier), Anders Nielsen [ctb, cph] (ORCID: , glmmTMB author), Casper Berg [ctb, cph] (ORCID: , glmmTMB author), Koen van Bentham [ctb, cph] (glmmTMB author), Olav Nikolai Breivik [ctb, cph] (SPDE barrier), Simon Wood [ctb, cph] (mgcv: smoother prediction), Paul-Christian Bürkner [ctb, cph] (brms: smoother matrix parsing), His Majesty the King in Right of Canada, as represented by the Minister of the Department of Fisheries and Oceans [cph] Maintainer: Sean C. Anderson